MIMI DB - An integrative Multi-Omics resource for Minor millets

BLAST Search

A Basic Local Alignment Search Tool (BLAST) is a powerful sequence similarity search program. It can find regions of local similarity between sequences and can be used to compare nucleotide or protein sequences to sequences in public databases.

Query	Database	Program
NUCLEOTIDE	Nucleotide Protein	blastn blastx
PROTEIN	Nucleotide Protein	tblastn blastp

References:

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403-10. PMID: 2231712.

Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. PMID: 9254694.